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Overview

Installation​

These instructions assume you have already set up and connected to the OmicsPipelines using the infrastructure application. You can set up the infrastructure application by following the instructions here and connect by following the instructions here.

Interacting with the dashboard​

Once you have set up your virtual machine, you can interact with the dashboard by going to the URL of the. You can find the URL by going to the infrastructure application and clicking on the Open Connection button.

The home page of the dashboard application will show you a list of workflows. If launching a new VM, this will be empty. A message will direct you to the workflow setup page.

Dashboard homepage

The homepage of the dashboard application

Self-hosting the Dashboard​

We recommend using the infrastructure application, but if you do want to set up the dashboard application on your own infrastructure, you can follow the instructions in the GitHub repository for the dashboard.

You can use the Docker Compose files (which we use on the VMs set up using the dashboard application). We provide pre-built Docker containers hosted on both AWS Elastic Container Registry and GCP Artifact Registry.

The AWS repo is public.ecr.aws/motrpac/omicspipelines

Be aware that the documentation assumes you are using the infrastructure application to connect to the application.